Systems biology short course : Integration of multi‐omics data for biomedical and nutritional applications
4-8 Dec 2023 Vandoeuvre‐les‐Nancy (France)
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Planning
Mon. 04
Tue. 05
Wed. 06
Thu. 07
Fri. 08
09:00
10:00
11:00
12:00
13:00
14:00
15:00
16:00
17:00
18:00
19:00
20:00
21:00
22:00
Introduction/Principles of Systems Biology
9:00 - 10:30 (1h30)
Introduction/Principles of Systems Biology
Coffee break
10:30 - 10:45 (15min)
Coffee break
Principles of COBRA I
10:45 - 12:15 (1h30)
Principles of COBRA I
Lunch
12:15 - 13:15 (1h)
Lunch
Principles of COBRA II
13:15 - 14:45 (1h30)
Principles of COBRA II
Coffee break
14:45 - 15:00 (15min)
Coffee break
Reconstruction methods and principles
15:00 - 17:00 (2h)
Reconstruction methods and principles
Modeling human metabolism
9:00 - 10:30 (1h30)
Modeling human metabolism
Coffee break
10:30 - 10:45 (15min)
Coffee break
Genome-scale reconstruction of the human microbiome
10:45 - 12:15 (1h30)
Genome-scale reconstruction of the human microbiome
Lunch
12:15 - 13:15 (1h)
Lunch
Introduction to MATLAB, installation
13:15 - 14:45 (1h30)
Introduction to MATLAB, installation
Coffee break
14:45 - 15:00 (15min)
Coffee break
Flux balance analysis (tutorial)
15:00 - 17:00 (2h)
Flux balance analysis (tutorial)
Applications in microbiome research
9:00 - 10:30 (1h30)
Applications in microbiome research
Coffee break
10:30 - 10:45 (15min)
Coffee break
Methods for modeling microbiome interactions
10:45 - 12:15 (1h30)
Methods for modeling microbiome interactions
Lunch
12:15 - 13:15 (1h)
Lunch
Personalized modeling of the microbiome (tutorial)
13:15 - 14:45 (1h30)
Personalized modeling of the microbiome (tutorial)
Coffee break
14:45 - 15:00 (15min)
Coffee break
Personalized modeling of the microbiome (tutorial)
15:00 - 17:00 (2h)
Personalized modeling of the microbiome (tutorial)
Modeling disease states
9:00 - 10:30 (1h30)
Modeling disease states
Coffee break
10:30 - 10:45 (15min)
Coffee break
Integration of omics data
10:45 - 12:15 (1h30)
Integration of omics data
Lunch
12:15 - 13:15 (1h)
Lunch
Integrating omics data with FASTCORE (tutorial)
13:15 - 14:45 (1h30)
Integrating omics data with FASTCORE (tutorial)
Coffee break
14:45 - 15:00 (15min)
Coffee break
Integrating omics data with FASTCORE (tutorial)
15:00 - 17:00 (2h)
Integrating omics data with FASTCORE (tutorial)
Visit of Nancy's St. Nicolas market
20:00 - 22:00 (2h)
Visit of Nancy's St. Nicolas market
Lessons for integrating meta-data into the statistical analyses of COBRA models
9:00 - 10:30 (1h30)
Lessons for integrating meta-data into the statistical analyses of COBRA models
Coffee break
10:30 - 10:45 (15min)
Coffee break
Applications in precision medicine
10:45 - 12:15 (1h30)
Applications in precision medicine
Lunch
12:15 - 13:15 (1h)
Lunch
Round table
13:15 - 14:45 (1h30)
Round table
Coffee break
14:45 - 15:00 (15min)
Coffee break
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